CASSbase

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CASSBASE

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Analyze
- Expression Atlas
- Mesculenta Cyc
- Accession Usage
- Graphical Filtering
- Barcode Tools
- Population Structure
- Compare Trials
- Sequence Analysis
- BLAST
- Other
- Ontology Browser
- Compose a New Trait
- Document Browser
Maps
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- About
- Contact
- Cite CassBase
- Manual
- Forum
- FTP Site

Advanced

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CASSbase Help

CASSbase is a comprehensive data management and analysis software for the Cassava Source Sink (CASS) project. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high density genotypic information, and provide Genomic Selection related analyses and predictions. CASS software also includes Expression Atlases, including transcriptomics, proteomics, and metabolomics tools.

The complete Breedbase help is available from the Breedbase and SGN manual.

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

List Comparison

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Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

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Your Calendar

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Event Info

Attribute	Value
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Start Date:
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Event Type:
Event Description:
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Working

Progress

CASSbase is located at the Boyce Thompson Institute for Plant Research.