CASSbase

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CASSBASE

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- Expression Atlas
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Create a New Vector

Vector details

Add Vectors

File format information
Spreadsheet format

Upload File:

Use Fuzzy Search:

Note: Use the fuzzy search to match similar names to prevent uploading of duplicate vectors. Fuzzy searching is much slower than regular search. Only a curator can disable the fuzzy search.

Vectors may be uploaded using any of the supported file types: MS Excel (.xls or .xlsx), comma-separated file (.csv), LibreOffice / OpenOffice OpenDocument spreadsheet (.ods), tab-delimited file (.txt or .tsv), or semicolon-separated file (.ssv).

Optional columns may be left out, if not used in your data.

Upload Vectors Template Information

Header:
The first row (header) must contain the uniquename column. Additional information can be included by selecting optional column(s) (see below). :

uniquename	Strain	CloningOrganism	InherentMarker	Backbone	SelectionMarker	CassetteName	VectorType	Gene	Promotors	Terminators	GenbankRecord	PlantAntibioticResistantMarker	BacterialResistantMarker

Required Fields:

uniquename (vector name must be unique)

Optional Fields:

Strain (no definition available)
CloningOrganism (no definition available)
InherentMarker (no definition available)
Backbone (no definition available)
SelectionMarker (no definition available)
CassetteName (no definition available)
VectorType (no definition available)
Gene (no definition available)
Promotors (no definition available)
Terminators (no definition available)
GenbankRecord (no definition available)
PlantAntibioticResistantMarker (no definition available)
BacterialResistantMarker (no definition available)

Vectors to be Added

Population name for added vectors (optional)

Organization name for added vectors (optional)

The following vectors are new and will be added to the database:

Fuzzy Matches

Vectors were found with similar names.

Found Vectors

The following vectors already exist in the database:

Vectors Saved

Add new vector and details.

Uniquename *

Auto generate uniquename

Cloning Organism Host

Strain

Backbone

Inherent Marker

Selection Marker

Host Antibiotic Resistant Marker

Bacterial Resistant Marker

Cassette Name

Gene

Promotors

Terminators

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

List Comparison

Download column:

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

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Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
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Organization:

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Working

Progress

CASSbase is located at the Boyce Thompson Institute for Plant Research.